Labs(y = "Relative abundance", x = "Site age since restoration (years)") + Scale_y_continuous(labels = scales::percent_format()) + Geom_bar(aes(), stat="identity", position="fill") + (Sample, levels = level_order)), Sample) plot graphī_ra_cont <- ggplot(Bacteriaphyseq, aes(x=Sample, y=Abundance, fill=Phylum)) + "NelBoT", "TauMcB", "HamMin", "ChrRic", "NplHrs","HamCla", "InvKBR", "WelOWR")īacteriaphyseq <- arrange(transform(Bacteriaphyseq, Sample = factor ![]() Level_order <- c("NelMRY", "WelOCH", "DunIsP", "InvWaR", "TauCaP", "ChrMrs", "HamAva", "NplPer", "InvEsW", "WelMtA", "DunSiH", (restoration_status, levels = restoration_status_order)), Restoration_status_order <- c("restored", "remnant")īacteriaphyseq <- arrange(transform(Bacteriaphyseq, restoration_status = factor We change the legend title using scalecolorcontinuous (). Levels(Bacteriaphyseq$restoration_status) ggplot(datairis,mappingaes(xPetal.Length,yPetal.Width))+ geompoint(aes(colorSepal.Width))+ geomsmooth(method'lm') 1.8 Titles Now let’s rename the axis labels, change the legend title and add a title, a subtitle and a caption. reorder facets by restored first and remnant second But I don't want to show the site codes on the graph, I want to show age along the x axis so it is simple to view, hence scale_x_discrete is labelling the site codes with their actual age in years,Īny help would be greatly appreciated! Cannot for the life of me find a solution which involves removing the x axis labels/inputting nothing into the x axis labels for just one facet. "Sample" contains the site codes and "level_order" is ordering them from youngest to oldest restored forests along the x axis. The variable "restoration_status" in my excel sheet groups the sites into either the restored or remnant category. I m using a phyloseq object called Bacteriaphyseq in this example containing Bacterial OTU data. I could of course just edit over top of this in Inkscape but would like a way of coding this in. I want the x axis in the remnant facet to be blank. However, the age for the restored facets is repeating automatically into the remnant facet when I use facet_grid. ![]() ![]() I'm looking at Bacterial relative abundance in restored forests with 3 remnant forests in a separate facet.
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